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68. Stegen, J., A. Burgin, M. Busch, J. Fisher, J. Ladau, J. Abrahamson, L. Kinsman-Costello, L. Li, X. Chen, T. Datry, N. McDowell, C. Tatariw, A. Braswell, J. Deines, J. Guimond, P. Regier, K. Rod, E. Bam, E. Fluet-Chouinard, I. Forbrich, K. Jaeger, T. O'Meara, T. Scheibe, E. Seybold, J. Sweetman, J. Zheng, D. C. Allen, E. Herndon, B. Middleton, S. Painter, K. Roche, J. Scamardo, R. Vander Vorste, K. Boye, E. Wohl, M. Zimmer, K. Hondula, M. Laan, A. Marshall, and K. Patel. 2024. Reviews and Syntheses: Variable Inundation Across Earth’s Terrestrial Ecosystems. EGUsphere. https://doi.org/10.5194/egusphere-2024-98

67. Busch, M. H, K. S. Boersma, S. C. Cook, C. N. Jones, C. Loflen, R. D. Mazor, R. Stancheva, A. N. Price, R. Stubbington, M. A. Zimmer, and D. C. Allen. 2024. Macroinvertebrate, algal and diatom assemblages respond differently to both drying and wetting transitions in non-perennial streams. Freshwater Biology. https://doi.org/10.1111/fwb.14327

66. Price, A. N., M. A. Zimmer, A. Bergrstom, A. J. Burgin, E. C. Seybold, C. A. Krabbenhoft, X. Zipper, M. H. Busch, W. K. Dodds, A. Walters, J. S. Rogosch, R. Stubbington, R. H. Walker, J. C. Stegen, T. Datry, M. Messager, J. Olden, S. E. Godsey, M. Shanafield, D. Lytle, R. Burrows, K. E. Kaiser, G. H. Allen, M. C. Mims, J. D. Tonkin, M. Bogan, J. C. Hammond, K. Boersma, A. N. Myers-Pigg, A. DelVecchia, D. C. Allen, S. Yu, and A. Ward. 2024. Biogeochemical and community ecology responses to the wetting of non-perennial streams. Nature Water. 2: 815-826. https://doi.org/10.1038/s44221-024-00298-3

65. Foulquier, A, et al (D. C. Allen 15th of 91 authors). Unravelling large-scale patterns and drivers of biodiversity in dry rivers. 2024. Nature Communications 15:7233. https://doi.org/10.1038/s41467-024-50873-1 64. Tiegs, S. D. et al. (D. C. Allen 10th of 100 authors). Human activities shape global patterns of decomposition rates in rivers. Science. 384(6701): 1191-1195.

63. Zenzal, T. J., A. Contina, H. B. Vander Zanden, L. K. Kuwahara, D. C. Allen, and K. M. Covino. 2024. Asynchronous movement patterns between breeding and stopover locations in a long-distance migratory songbird. Avian Conservation and Ecology. 19(2): 3. https://doi.org/10.5751/ACE-02688-190203

62. Malish, M. C., S. Gao, D. C. Allen, and T. M. Neeson. 2024. Impacts of stream drying depend on stream network size and location of drying. 34(6): e3015. Ecological Applications. https://doi.org/10.1002/eap.3015

61. Allen, D. C., J. Larson, C. A. Murphy, E. A. Garcia, K. E. Anderson, M. H. Busch, A. Argerich, A. M. Belskis, K. T. Higgins, B. Penaluna, V. Saenz, J. Jones, and M. R. Whiles. 2024. Global patterns of allochthony in stream-riparian meta-ecosystems. Ecology Letters. https://doi.org/10.1111/ele.14401

60. Gill, B. A, D. C. Allen, M. C. Mims, T. M. Neeson, A. Ruhi, C. Atkinson, A. Shogren, T. Apgar, Z. G. Compson, S. Cook, D. R. Trumbo, M. H. Busch, K. D. Hollein, K. Leathers, M. C. Malish, G. L. O’Malley, S. Silknetter, C. R. Smith, H. Dunleavy, and M. T. Bogan.  2024. Combined benthic and stream edge sampling better represent macroinvertebrate assemblages than benthic sampling alone to varying extents across an aridity gradient. Limnology and Oceanography Methods. http://doi.org/10.1002/lom3.10601

59. Brown, B., A. H. Fullerton, D. Kopp, F. Tromboni, A. J. Shogren, J. A. Webb, C. Ruffing, M. Heaton, L. Kuglerová, D. C. Allen, L. McGill, J. P. Zarnetske, M. R. Whiles, J. B. Jones, and B. W. Abbott. 2023. The Music of Rivers: the Mathematics of Waves Reveals Global Structure and Drivers of Streamflow Regime. Water Resources Research. 59(7): e2023WR034484. https://doi.org/10.1029/2023WR034484

58. Emmons, S. C., Z. C. Compson, M. C. Malish, M. H. Busch, V. Saenz, K. T. Higgins, and D. C. Allen. 2023. DNA metabarcoding captures different macroinvertebrate biodiversity than morphological identification approaches across a continental scale. Environmental DNA. https://doi.org/10.1002/edn3.453

57. Nelson, D., M. H. Busch, D. A. Kopp, and D. C. Allen. 2023. Drying, but not warming, alters ecosystem functioning in streams with different energy pathways. Functional Ecology. 37(7) 1989-2001. http://doi.org/10.1111/1365-2435.14351

56. Busch, M.H., D. C. Allen, Marske, K.A., Kuczynski, L. 2023. The only lasting truth is change: Multiple dimensions of biodiversity show historical legacy effects in community assembly processes of freshwater fish. Oikos. 2023 (6): e09713. http://doi.org/10.1111/oik.09713

55. Allen, D. C., B. A. Gill, A. Metcalf, S. Bonjour, S. Starr, J. Wang, D. Valentin, and N. B. Grimm. 2023. Taxonomic identity, biodiversity, and disturbance magnitude shape the dimensional stability of stream invertebrates. Limnology and Oceanography Letters. 8(3) 464-472. https://doi.org/10.1002/lol2.10303

54. Contina, A., C. M. Bossu, D. C. Allen, M. B. Wunder, and K. C. Ruegg. 2023. Genetic and ecological drivers of molt in a migratory bird. Scientific Reports. 13: 814. https://doi.org/10.1038/s41598-022-26973-7

53. Malish, M., S. Gao, D. Kopp; Y. Hong; D. C. Allen; and T. Neeson. 2023. Small increases in stream drying can dramatically reduce ecosystem connectivity. Ecosphere. 14(3) e4450. https://doi.org/10.1002/ecs2.4450

52. Datry, T., A. Truchy, J. Olden, M. Busch, R. Stubbington, W. Dodds, S. Zipper, S. Yu, M. Messager, J. Tonkin, K. Kaiser, J. Hammond, E. Moody, R. Burrows, R. Sarremejane, A. DelVecchia, M. Fork, C. Little, R. Walker, A. Walters, and D. C. Allen. 2023. Anthropogenic versus Naturally Intermittent Rivers: Science, Management, and Policy Implications. BioScience. 73(1): 9-22. https://doi.org/10.1093/biosci/biac098

51. Compson, Z. G., W. A. Monk, R. Sarremejane, A. G. DelVecchia, R. M. Burrows, S. Gao, B. L. Ruddell, Y. Hong, and D. C. Allen. 2022. Dryland Rivers and Streams. Book chapter in Encyclopedia of Inland Waters, 2nd edition, pages 616-627. Eds: K. Tockner, T. Mehner, and G. Likens. Elsevier Press.

50. Lopez, J. L., D. C. Allen, C. C. Vaughn. 2022. White-tailed deer consumption of emergent macrophytes mediates aquatic-to-terrestrial nutrient flows. Ecology and Evolution. 12(9): e9257. https://doi.org/10.1002/ece3.9257

49. Contina, A., C. M. Bossu, D. C. Allen, M. B. Wunder, and K. C. Ruegg. 2022. Genetic and ecological drivers of molt in a migratory bird. BioRxiv. https://doi.org/10.1101/2022.08.17.504285. 

48. Brauns, M., D. C. Allen, I. G. Boëchat, W. F. Cross, V. Ferreira, D. Graeber, C. J. Patrick, M. Peipoch, D. von Schiller, and B. Gücker. 2022. A global synthesis of human impacts on lotic ecosystem multifunctionality. Global Change Biology. https://doi.org/10.1111/gcb.16210

47. Krabbenhoft, C. A., G. H. Allen, P. Lin, S. E. Godsey, D. C. Allen, R. M. Burrows, A. G. DelVecchia, K. M. Fritz, M. Shanafield, A. J. Burgin, M. Zimmer, T. Datry, W. K. Dodds, C. N. Jones, M. C. Mims, C. Franklin, J. C. Hammond, S. C. Zipper, A. S. Ward, K. H. Costigan, H. E. Beck, and J. D. Olden. 2022. Assessing placement bias of the global river gauge network. Nature Sustainability. https://doi.org/10.1038/s41893-022-00873-0

46. DelVecchia, A. G., M. Shanafield, M. A. Zimmer, M. H. Busch, C. A. Krabbenhoft, R. Stubbington, K. E. Kaiser, R. M. Burrows, J. Hosen, T. Datry, S. Kampf, S. C. Zipper, K. Fritz, K. Costigan, and D. C. Allen. 2022. Reconceptualizing the hyporheic zone of non-perennial rivers and streams. Freshwater Science. https://doi.org/10.1086/720071

45. Datry, T, D. Allen, R. Argelich, J. Barquin, N. Bonada, A.Boulton, F. Branger, Y. Cai, M. Cañedo-Argüelles, N. Cid, Z. Csabai, M. Dallimer, J. Carlos de Araújo, S. Declerck, T. Dekker, P. Döll, A. Encalada, M. Forcellini, A. Foulquier, J. Heino, F. Jabot, P. Keszler, L. Kopperoinen, S. Kralisch, A. Künne, N. Lamouroux, C. Lauvernet, V. Lehtoranta, B. Loskotová, R. Marcé, J. Martin Ortega, C. Matauschek, M. Miliša, S. Mogyorósi, N. Moya, H. Müller Schmied, A. Munné, F. Munoz, H. Mykrä, I. Pal, R. Paloniemi, P. Pařil, P. Pengal, B. Pernecker, M. Polášek, C. Rezende, S. Sabater, R. Sarremejane, G. Schmidt, L. Senerpont Domis, G. Singer, E. Suárez, M. Talluto, S. Teurlincx, T. Trautmann, A. Truchy, E. Tyllianakis, S. Väisänen, L. Varumo, J. Vidal, A. Vilmi, D. Vinyoles. 2021. Securing Biodiversity, Functional Integrity, and Ecosystem Services in Drying River Networks (DRYvER). Research Ideas and Outcomes. 7: e77750. link

44. Gao, S., Z. Li, M. Chen, P. Lin, Z. Hong, D. C. Allen, T. Neeson, and Y. Hong. 2021. Spatiotemporal variability of global river extent and the natural driving factors revealed by decades of Landsat observations, GRACE gravimetry observations, and land surface model simulations. Remote Sensing of Environment. 267: 112725. link

43. Gao, S., Z. Li, M. Chen, D. C. Allen, T. Neeson, and Y. Hong. 2021. Monitoring drought through the lens of Landsat: drying of rivers during the California droughts. Remote Sensing. 13(17): 3423. link

42. Besozzi, E., B. Chew, D. C. Allen, and A. Contina. 2021. Stable isotope analysis of an aberrant Painted Bunting (Passerina ciris) feather suggests post-molt movements. Wilson Journal of Orinthology. 133(1): 151-158. link

41. Nelson, D., M. H. Busch, D. A. Kopp, and D. C. Allen. 2021. Energy pathways modulate the resilience of stream invertebrate communities to drought. Journal of Animal Ecology. 90: 2053-2064. link

40. Brown, B., A. H. Fullerton, D. Kopp, F. Tromboni, A. J. Shogren, J. A. Webb, C. Ruffing, M. J. Heaton, L. Kuglerova, D. C. Allen, L. McGill, J. P Zarnetske, M. R Whiles, J. B. Jones, B. W. Abbott. 2021. The Music of Rivers: How the Mathematics of Waves Reveals Global Drivers of Streamflow Regime. Earth and Open Space Science Archive. DOI: 10.1002/essoar.10507854.1

39. Zipper, S. C., J. C. Hammond, M. Shanafield, M. Zimmer, T. Datry, C. N. Jones, K. E. Kaiser, S. E Godsey, R. M. Burrows, J. R. Blaszczak, M. H. Busch, A. N. Price, K. S. Boersma, A. S. Ward, K. Costigan, G. H. Allen, C. A. Krabbenhoft, W. K. Dodds, M. C. Mims, J. D. Olden, S. K. Kampf, Amy J. Burgin, and D. C. Allen. 2021. Pervasive changes in stream intermittence across the United States. Environmental Research Letters. 16: 084033. link, highlight in Science

38. Gao, S., M. Chen, Z. Li, S. Cook., D. C. Allen, T. Neeson, T. Yang, T. Yami, and Y. Hong. 2021. Mapping dynamic non-perennial stream networks using high-resolution distributed hydrologic simulation: a case study in the upper Blue River basin. Journal of Hydrology. 600: 126522. link

37. Kopp, D. A., and D. C. Allen. 2021. Scaling landscape pattern in river networks: the effects of spatial extent, grain size and thematic resolution. Landscape Ecology. 36: 2781-2794. link

36. Albuquerque, F., H. L. Bateman, C. Boheme, D. C. Allen, and L. Cauela. 2021. Variation in temperature, precipitation, and vegetation productivity drive changes in seasonal variation of avian diversity in an urban desert landscape. Land. 10(5) 480. link

35. Kopp, D. A. and D. C. Allen. 2021. Trait-environment relationships could alter the spatial and temporal characteristics of aquatic insect subsidies at the macrospatial scale. Ecography. 44(3): 391-402. link

34. Hammond, J., M. Zimmer, M. Shanafield, K. Kaiser, S. Godsey, M. Mims, S. Zipper, R. Burrows, S. Kampf, W. Dodds, C. N. Jones, C. Krabbenhoft, K. Boersma, T. Datry, J. Olden, G. Allen, A. Price, K. Costigan, R. Hale, A. Ward, and D. C. Allen. 2021. Spatial patterns and drivers of non-perennial flow regimes in the contiguous U.S. Geophysical Research Letters. 48(2). e2020GL090794. link

33. Lopez, J. W., T. B. Parr, D. C. Allen, and C. C. Vaughn. 2020. Animal aggregations promote emergent aquatic plant production at the aquatic-terrestrial interface. Ecology. 101(10): e03126 link

32. Allen, D. C., T. Datry, K. Boersma, M. Bogan, A. Boulton, M. Busch, K. Costigan, W. Dodds, K. Fritz, S. Godsey, J. Jones, T. Kaletova, S. Kampf, M. Mims, T. Neeson, J. Olden, A. Pastor, N. L. Poff, B. Ruddell, A. Ruhi, G. Singer, P. Vezza, A. Ward, M. Zimmer. 2020. River ecosystem conceptual models and non-perennial rivers: A critical review. Wiley Interdisciplinary Reviews - Water. 7: e1473. indicates co-lead authors. link

31. Busch, M. H., Costigan, K. H., Fritz, K. M., Datry, T., Krabbenhoft, C. A., Hammond, J. C., Zimmer, M., Olden, J. D., Burrows, R. M., Dodds, W. K., Boersma, K. S., Shanafield, M., Kampf, S. K., Mims, M. C., Bogan, M. T., Ward, A. S., Perez Rocha, M., Allen, G. H., Blaszczak, J. R., Jones, C. N., and D. C. Allen. 2020. What’s in a name? Patterns and trends in the definition of non-perennial rivers and streams. WATER. 12(7): 1980. link

30. Zimmer, M., K. Kaiser, J. Blaszczak, S. Zipper, J. Hammond, K. Fritz, K. Costigan, J. Hosen, S. Godsey, G. Allen, S. Kampf, R. Burrows, C. Krabbenhoft, W. Dodds, R. Hale, J. Olden, M. Shanafield, A. DelVecchia, A. Ward, M. Mims, T. Datry, M. Bogan, K. Boersma, M. Busch, C. Jones, A. Burgin, and D. C. Allen. 2020. Zero or not? Causes and consequences of zero-flow stream gage readings. Wiley Interdisciplinary Reviews - Water. 7(3): e1436. link

29. Shanafield, M., S. Godsey, T. Datry, R. Hale, S. C. Zipper, K. Costigan, C. A. Krabbenhoft, W. K. Dodds, M. Zimmer, D. C. Allen, M. Bogan, K. E. Kaiser, R. M. Burrows, J. C. Hammond, M. Busch, S. Kampf, M. C. Mims, A. Burgin, and J. D. Olden. 2020. Science gets up to speed on dry rivers. Eos 101: https://doi.org/10.1029/2020EO139902.

28. Allen, D. C., H. L. Bateman, P. Warren, F. S. Albuquerque, S. Arnett-Romero, and B. Harding. 2019. Long-term effects of land-use change on bird biodiversity and community structure depend on spatial scale and land-use type.  Ecosphere 10(11): e02952. link

27. von Shiller, D., et al (D. C. Allen 15th of 92 authors). 2019. Sediment respiration pulses in intermittent rivers and ephemeral streams. Global Biogeochemical Cycles. 33(10): 1251-1263. link

26. Kopp, D. A. and D. C. Allen. 2019. Stream network geometry and the spatial influence of aquatic insect subsidies across the contiguous US. Ecosphere. 10(11) e02926. link

25. Allen, D. C. 2019. Nutritional hotspots? Prey from one ecosystem provide key fatty acids required for consumers in multiple ecosystems. Functional Ecology. 33: 1816-1817. link

24. Allen, D. C., D. A. Kopp, T. Datry, K. Costigan, B. Hugueny, D. L. Turner, G. Bodner, and T. Flood. 2019. Citizen scientists document long-term streamflow declines in intermittent rivers of the desert southwest, USA. Freshwater Science. 38(2): 244-256. link

23. Patrick., C.J., D. McGarvey, W. Cross, D. C. Allen, A. Benke, T. Brey, A. Huryn, J. Jones, C. Murphy, C. Ruffing, P. Saffarinia, M. Whiles, B. Wallace, and G. Woodward. 2019. Precipitation and temperature drive continental to global patterns in stream invertebrate secondary production. Science Advances. 5(4): eaav2348. link

22. Shumilova, O, et al. (D. C. Allen 9th of 77 authors). 2019. Simulating rewetting events in intermittent rivers and ephemeral streams: A global analysis of leached nutrients and organic matter. Global Change Biology. 25: 1591-1611. link

21. Tiegs S. et al. (D. C. Allen 12th of 151 authors). 2019. Global ecosystem functioning gauged through crowdsourcing. Science Advances. 5(1): eeav0486. link

20. Marshall, J. C., V. Acuña, D. C. Allen, N. Bonada, A.J. Boulton, S. M. Carlson, C. N. Dahm, T. Datry, C. Leigh, P. Negus, J. S. Richardson, S. Sabater, R. J. Stevenson, A. L. Steward, R. Stubbington, K. Tockner, R. Vander Vorste. 2018. Protecting U.S. temporary waterways. Science. 361: 856. link

19.  Datry, T. et al. (D. Allen 13th of 94 authors). 2018. A global analysis of terrestrial plant litter dynamics in non-perennial waterways. Nature Geoscience. 11: 497–503. link

18. Rodriguez Rodriguez, M, D. A. Kopp, D. C. Allen, and Y. Kang. 2018. Dynamical implications of bi-directional resource exchange within a meta-ecosystem. Mathematical Biosciences. 301: 167-184. link

17. Allen, D. C., T. Wynn-Thompson, D. A. Kopp and B. J. Cardinale.  2018. Riparian plant biodiversity reduces stream channel migration rates in 3 rivers in Michigan, USA. Ecohydrology. 11: e1972. link

16. Andrade, R., H. L. Bateman, J. Franklin, and D. C. Allen. 2018. Waterbird community composition, abundance, and diversity along an urban gradient. Landscape and Urban Planning. 170: 103-111. link

15. Hornbach, D. J., D. C. Allen, M. C. Hove, and K. R. MacGregor.  2018. Long-term decline of native freshwater mussel assemblages in a federally protected US river. Freshwater Biology. 63: 243-263. link

14. Atkinson, C. A., D. C. Allen, L. Davis, and Z. L. Nickerson. 2018. Incorporating ecogeomorphic feedbacks to better understand resiliency in streams: a review and directions forward. Geomorphology. 305: 123-140. link

13. Allen, D. C. and J. S. Wesner. 2016. Synthesis: comparing effects of resource and consumer fluxes into recipient food webs using meta-analysis.  Ecology 97: 594-604. link

12. Allen, D. C. 2016. Microclimate modification by riparian vegetation affects the structure and resource limitation of arthropod communities. Ecosphere 7: e1200.  link

11. Allen, D. C., B. J. Cardinale, and T. Wynn-Thompson. 2016. Plant biodiversity effects in reducing fluvial erosion are limited to low species richness.  Ecology 97: 17-24. link

10. Albertson, L. K., and D. C. Allen. 2015. Meta-analysis: Organism size, abundance, behavior, and hydraulic energy shape biotic effects on sediment transport in streams. Ecology 96: 1329-1339. link

9. Allen, D. C., B. J. Cardinale, and T. Wynn-Thompson. 2014. Towards a better integration of ecological principles into interdisciplinary ecogeoscience research. BioScience 64: 444-454.  link

8. Allen, D. C., K. E. McCluney, S. R. Elser, and J. L Sabo. 2014. Water as a trophic currency in dryland food webs. Frontiers in Ecology and the Environment 12: 156-160. link

7. Allen, D. C., H. S. Galbraith, C. C. Vaughn, and D. E. Spooner. 2013. A tale of two rivers: implications of water management practices on freshwater mussel biodiversity outcomes during a multi-year drought. AMBIO 42: 881-891. link

6. Allen, D. C., C. C. Vaughn, J. F. Kelly, J. T. Cooper, M. H. Engel. 2012. Bottom-up biodiversity effects increase resource subsidy flux between ecosystems. Ecology 93: 2165-2174. link

5. Allen, D. C., and C. C. Vaughn. 2011. Density-dependent biodiversity effects on physical habitat modification by freshwater bivalves. Ecology 92: 1013-1019. link

4. Allen, D. C., and C. C. Vaughn. 2010. Hydraulic and substrate variables limit species richness and abundance of freshwater mussel communities. Journal of the North American Benthological Society 29(2): 383-394. link

3. Allen, D. C., and C. C. Vaughn. 2009. Burrowing behavior of freshwater mussel species in experimentally manipulated communities. Journal of the North American Benthological Society 28(1): 93-100. link

2. Allen, D. C., D. M. Morris, and C. C. Vaughn. 2008. Nerodia sipedon (northern water snake). Mortality caused by mussel? Herpetological Review 39(4): 471-472. link

1. Allen, D. C., M. C. Hove, B. E. Sietman, D. E. Kelner, J. E. Kurth, J. M. Davis, J. L. Weiss, and D. J. Hornbach. 2007. Early life-history and conservation status of Venustaconcha ellipsiformis (Bivalvia: Unionidae) in Minnesota. American Midland Naturalist 157(1): 74-91. link